P02
Multi modal prediction of therapy response for rectal cancer patients
Project Leaders

Dr. Nadine Flinner
Goethe University Frankfurt
Research Focus

P02 will focus on the impact of the TME on survival of rectal cancer patients and develop machine learning methods that integrate molecular omics data to predict treatment outcome. The project is based on the notion that networks based on multi-modal data (histopathology and molecular omics) will outperform networks trained with only one of the two data modalities. Thus, P02 will couple multi-view data via graph neuronal networks where the individual nodes represent cells, which carry RNA expression and morphological features, and edges connect neighboring cells based on their Euclidean distances (cell-graphs).
Main Collaborations
- P01 Greten: Modulating CAF plasticity to enable immunotherapy of colorectal cancer:
- P03 Briquez/Fichtner-Feigl/Reuten: Metastasis predisposing extracellular matrix architecture in colorectal cancer:
- P04 Farin/Stemmler: Mapping the CAF subtype-dependent reciprocal signaling in the CRC niche:
- P05 Neufert: The role of LIFR signaling in CAFs in CRC:
- P08 Weigert: The role of IL-38 in shaping tumor-promoting versus protective inflammation in colorectal cancer:
- P16 Fichtner-Feigl/Imkeller: The role of primary-CRC-derived adaptive immune cells in anti-metastasis immunity:
- P17 Ziegler: STAT3-controlled cross-dressing of dendritic cells in anti-tumor immunity:
- P18 Buchholz/Farin: Identifying and overcoming CAR T cell barriers in the colorectal carcinoma microenvironment:
- S02 Reiss/Ritter: Spatial profiling of the tumor microenvironment in CRC:
- S03 Börries/Gupta: Research Information Infrastructure, Data Management and Bioinformatics Core:
Core Team

Dr. Nadine Flinner
Project Leader
Goethe University Frankfurt